基于区域剖分算法的土壤碳通量空间采样策略

由于土壤碳通量在空间分布上具有很强的异质性,传统的采样方法难以对区域土壤碳通量进行精确估算,因此确定适当的采样策略对区域土壤碳通量的估算具有重要意义.本文提出一种逐点递增式采样的区域剖分部署策略(RDPG):设定初始采样点,使用改进的凸包插值算法构造Delaunay三角网,根据邻近已知采样点插值计算三角形各边垂直平分线的交点的离散度,选择离散度最大的点作为新增采样点.采用该方法对变异系数为0.42～0.59的仿真试验区域进行多次试验,结果表明:在相同试验条件下,RDPG布局策略能够获得比随机采样和均匀采样策略更高的区域土壤碳通量估算准确度.RDPG方法考虑了区域土壤碳通量的空间异质性,提高了区域土壤碳通量拟合精度.     

高通量测序技术在遗传性耳聋研究中的应用及研究进展

耳聋是一种常见的严重出生缺陷,阐明遗传性耳聋的致病机理不仅能够在临床上辅助诊断,为遗传咨询及耳聋预防提供依据,而且能促进人们更深入地了解耳聋的致病机制,开发新的治疗方法。随着基因组研究技术不断创新,以全基因组测序、全外显子组测序、目标区域测序为代表的高通量测序技术在遗传性耳聋研究中已得到广泛应用。本文总结了近5年全外显子组测序和目标区域测序在遗传性耳聋致病基因研究及临床分子诊断中应用及研究进展,希望能够有助于我国临床耳聋基因诊断技术的发展及诊断水平的提升。     

凉山州龙肘山锈红杜鹃与薄叶马银花根部真菌分子检测

【目的】为检验直接分子检测法用于揭示杜鹃花属(Rhododendron)植物根部真菌(Root-associated fungi,RAF)组成的有效性。【方法】采用不依赖于培养的分子检测技术直接从锈红杜鹃(R.bureavii)与薄叶马银花(R.leptothrium)的发根(Hair root)提取DNA,用真菌特异性引物扩增r DNA-ITS区、经克隆后测序,对获得的ITS序列进行分析;通过收集NCBI中与本研究的RAF相似性97%以上的所有序列对应的真菌来源(土壤或根系的身份)数据,分析真菌的生态学特性,并用FUNGuild软件提供的方法划分真菌的生态类型。【结果】从两种杜鹃花根部共检测到15种真菌,其中担子菌门(Basdiomycota)真菌3种,子囊菌门(Ascomycota)真菌12种。柔膜菌目(Helotiales)真菌在两种杜鹃花RAF群落中占据优势,并且在两种杜鹃花根系中均检测到该类真菌。此外,两种杜鹃花根部有多种生态类型的RAF共存,包括曾被频繁报道的杜鹃花类菌根菌Oidiodendron sp.和Rhizoscyphus sp.、内生真菌Phialocephala fortinii、共生一致病过渡型真菌Pezoloma ericae、外生菌根共生菌Meliniomyces sp.,以及腐生型真菌Myceana sp.、Lachnum virgineum、Herpotrichia sp.。【结论】直接分子检测法从两种杜鹃花属植物根部检测到的真菌谱系多样性较高、生态类型复杂,这一方法能较为全面地反映杜鹃花属植物RAF多样性。     

SaudiVeg ecoinformatics: Aims,current status and perspectives

During the last decade many electronic databases of vegetation plots were established in many countries around the world. These databases contain valuable phytosociological information assisting both governmental and NGO (Non-governmental organizations) agencies to formulate strategies and on-ground plans to manage and protect nature resources. This paper provides an account on aims, current status and perspectives of building of a vegetation database for the Central Region (Najd) of Saudi Arabia – the founding element of the Saudi Vegetation Database (SVD). The data stored by the database are sample plots (vegetation relevés) collected according to the field techniques of the Braun-Blanquet approach (lists of taxa accompanied by semi-quantitative cover assessment), and are accompanied by general vegetation characteristics such as vegetation layering and cover, information on life-form of the recorded species, geographical coordinates, altitude, soil typology, topography and many more. More than 2900 vegetation-plot records (relevés) have so far been collected in the Najd region; of these more than 2000 have already been stored using the Turboveg database platform. These field records cover many habitats such as depressions, wadis (dry river beds), agricultural lands, sand dunes, sabkhas, and ruderal habitats. The ecological information collected in the database is currently the largest set of vegetation data collated into a database in the Middle East. These data are of great importance for biodiversity studies in Saudi Arabia, since the region is recording a loss of biodiversity at a fast rate due to environmental problems such as global warming and land-use changes. We envisage that this database would catalyze further data collection on vegetation of the entire Arabian Peninsula, and shall serve as one of the most important datasets for classification and mapping of the vegetation of the Kingdom of Saudi Arabia.     

Phylogeographic breaks and the mechanisms of their formation in the Sino-Japanese floristic region

Due to combinations of diverse geography and climate, and complex geo-climate histories and sea level fluctuations, the Sino-Japanese floristic region has extremely high species diversity. Phylogeography is an effective method to identify the factors triggering the formation and differentiation of species diversity. Previous studies showed that phylogeographic breaks, the genetic discontinuity between different gene genealogies, were ubiquitously present. From the west to the east, seven general phylogeographic breaks occur, including the Mekong- Salween Divide, the Tanaka-Kaiyong Line, the Sichuan Basin, ca. 105° E, the boundary between the Second and Third ladders, the North China, and the East China Sea and Korea Strait. These phylogeographic breaks are mainly attributable to both historical and ecological factors, which are generally due to a combined effect of the isolation by distance (IBD) and the isolation by environment (IBE). Geological events and climate changes are the historical factors, mainly including the uplift of Qinghai-Xizang Plateau, the formation and intensification of the Asian monsoon and the Asian interior aridification, the redevelopment of the arid belt, and the Quaternary climate oscillations and sea level fluctuations. Adaptive divergence, namely the divergence induced by different selective pressures under different environments, is responsible for the ecological factors. Adaptive divergence could obstacle gene flow among populations, resulting in the formation of phylogeographic break. However, an identical phylogeographic break is not shared by all the plants because of their various intrinsic biological characteristics, among which the difference in dispersal ability is most important. Finally, we envisaged the future development of phylogeographic break studies based on accurate divergence time estimation, relative contribution of IBD and IBE, and also the utilization of comparative phylogeography.     

家蚕二分浓核病毒ns1基因序列的改造、表达和鉴定

探讨翻译起始区(TIR)部分密码子发生同义突变后,对家蚕二分浓核病毒(BmBDV)ns1基因表达的影响,以及对BmBDV NS1蛋白毒性进行鉴定,设计特异性上游引物,对BmBDV ns1基因中第3、4、9和10个密码子进行同义突变,利用原核表达系统对野生型和改造后的ns1序列进行表达,通过SDS-PAGE电泳对这两种序列的表达产量进行分析。利用Protein Iso~(TM)GST Resin从超声破碎的菌液上清中纯化融合有GST的NS1蛋白,进而对纯化的靶蛋白在细胞水平和家蚕体内进行毒性分析。结果表明:TIR突变后的BmBDV ns1序列,其与野生型序列的表达产量之间没有明显差异;BmBDV NS1蛋白具有抑制细胞增殖和诱导家蚕致死的生化活性。     

Study of Saharan dust influence on PM10 measures in Sicily from 2013 to 2015

Nowadays, particulate matter, especially that with small dimension as PM₁₀, PM_2.5 and PM_1, is the air quality indicator most commonly associated with a number of adverse health effects. In this paper it is analyzed the impact that a natural event, such as the transport of Saharan dust, can have on increasing the particulate matter concentration in Sicily.Consulting the data of daily PM₁₀ concentration, acquired by air quality monitoring network belonging to “Agenzia Regionale Protezionedell’ Ambiente” (Environmental Protection Regional Agency), it was possible to analyze the trend from 2013 to 2015. The days, in which the limit value was exceeded, were subjected to combined analysis. It was based on three models: interpretations of the air masses back-trajectories, using the atmospheric model HYSPLIT (HYbrid Single-Particle Lagrangian Integrated trajectory); on the calculation of the concentration on the ground and at high altitude particulate applying DREAM model (Dust REgional atmospheric model) and on the calculation of the concentration of mineral aerosols according to the atmospheric optical thickness (AOT) applying NAAPS model (Navy Aerosol Analysis and Prediction System).The daily limit value exceedances were attributed to the transport of Saharan dust events exclusively when the three models were in agreement with each other. Identifying the natural events, it was possible to quantify the contribution of the Saharan dust and consequently the reduction of the exceedances number. To quantify the contribution of Saharan dust on daily PM₁₀ concentration, it was calculated the regional background in according to precautionary approach recommended by “Guidance on the quantification of the contribution of natural sources under the EU Air Quality Directive 2008/50/EC”, when the application of the method cannot be validated with chemical analysis, as in this case. In this study is obtained, as the most important quantitative goal, the convergence of the three models to the same result. So, is evident that exceedances of the daily limit value that occurred from 2013 to 2015 in Sicily can be attributed, in most cases, to the Saharan dust intrusion.     

Analysis of spatial and temporal patterns of aboveground net primary productivity in the Eurasian steppe region from 1982 to 2013

To explore the importance of the Eurasian steppe region (EASR) in global carbon cycling, we analyzed the spatiotemporal dynamics of the aboveground net primary productivity (ANPP) of the entire EASR from 1982 to 2013. The ANPP in the EASR was estimated from the Integrated ANPP_NDVI model, which is an empirical model developed based on field‐observed ANPP and long‐term normalized difference vegetation index (NDVI) data. The optimal composite period of NDVI data was identified by considering spatial heterogeneities across the study area in the Integrated ANPP_NDVI model. EASR's ANPP had apparent zonal patterns along hydrothermal gradients, and the mean annual value was 43.78 g C m^?2 yr^?1, which was lower than the global grasslands average. Compared to other important natural grasslands, EASR's ANPP was lower than the North American, South American, and African grasslands. The total aboveground net primary productivity (TANPP) was found to be 378.97 Tg C yr^?1, which accounted for 8.18%–36.03% of the TANPP for all grasslands. In addition, EASR's TANPP was higher than that of the grasslands in North America, South America, and Africa. The EASR's TANPP increased in a fluctuating manner throughout the entire period of 1982–2013. The increasing trend was greater than that for North American and South American and was lower than that for African grasslands over the same period. The years 1995 and 2007 were two turning points at which trends in EASR's TANPP significantly changed. Our analysis demonstrated that the EASR has been playing a substantial and progressively more important role in global carbon sequestration. In addition, in the development of empirical NDVI‐based ANPP models, the early–middle growing season averaged NDVI, the middle–late growing season averaged NDVI and the annual maximum NDVI are recommended for use for semi‐humid regions, semi‐arid regions, and desert vegetation in semi‐arid regions, respectively.     

The Functional Role of the Hollow Region of the Butterfly Pyrameis atalanta （L.） Scale

Questions concerning the functional role of the hollow region of the butterfly Pyrameis atalanta （L.） scale are experimentally investigated. Attention was initially directed to this problem by observation of the complex microstrucmre of the butterfly scale as well as other studies indicating higher lift on butterfly wings covered with scale. The aerodynamic forces were measured for two oscillating scale models. Results indicated that the air cavity of an oscillating model of the Pyrameis atalanta （L.） scale increased the lift by a factor of 1.15 and reduced the damping coefficients by a factor of 1.38. The modification of the aerodynamic effects on the model of butterfly scale was due to an increase of the virtual air mass, which influenced the body. The hollow region of the scale increased the virtual air mass by a factor of 1.2. The virtual mass of the butterfly scale with the hollow region was represented as the sum of air mass of two imaginary geometrical figures： a circular cylinder around the scale and a right-angled parallelepiped within the hollow region. The interaction mechanism of the butterfly Pyrameis atalanta （L.） scale with a flow was described. This novel interaction mechanism explained most geometrical features of the airpermeable butterfly scale （inverted V-profile of the ridges, nozzle of the tip edge, hollow region, and openings of the upper lamina） and their arrangement.